PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 215aa    MW: 24603.9 Da    PI: 10.9315
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489760.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.1e-1254100354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+E+rRR riN  +e+Lr++lP++      K +Ka+iL ++++ +k+L
  XP_004489760.1  54 KKHSEAEKRRRMRINGQYETLRSILPNL-----IKKDKASILVETIKQVKEL 100
                     68*************************9.....699**********999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.65351100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-954100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.96E-854103No hitNo description
SuperFamilySSF474593.79E-1354117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1255116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-857106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.58E-7140207No hitNo description
Gene3DG3DSA:3.30.70.2603.9E-7141203No hitNo description
CDDcd048732.31E-5142190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVLLRQGMQH VRNYYNSEAQ MIRSNFPRPF ISQTYKSSFT KQKSKVENKL LAAKKHSEAE  60
KRRRMRINGQ YETLRSILPN LIKKDKASIL VETIKQVKEL KKKASNLEEQ NRGTLKEVKF  120
PSGGDRLNLE KCNDEEGLVK ATLSCEDRPG LMSSIARAIG SMKAKVVKTE MVTVGGRTKT  180
VLWVQGIENE SMGMLKSTLK VVMHKPSFKM RRFPQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9317287e-71CR931728.1 Medicago truncatula chromosome 5 clone mth2-175g3, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489760.11e-158PREDICTED: transcription factor bHLH131-like
TrEMBLA0A072UF381e-121A0A072UF38_MEDTR; Helix loop helix DNA-binding domain protein
STRINGGLYMA02G04650.21e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.12e-45bHLH family protein